Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs13401327 | chr2:37135103 | C/T | 1.4E-5 | 367 | 20.45 | 13.37 | 8.73 | KM Plot |
| LIHC | rs13413438 | chr2:37163376 | C/T | 1.16E-5 | 365 | 20.5 | 12.17 | 8.73 | KM Plot |
| LIHC | rs13424317 | chr2:37159384 | A/G | 1.17E-5 | 362 | 20.45 | 12.17 | 8.73 | KM Plot |
| LIHC | rs1348493 | chr18:65288765 | A/G | 1.71E-5 | 368 | 2.43 | 19.17 | 19.87 | KM Plot |
| LIHC | rs1349688 | chr11:119978608 | G/C | 6.7E-12 | 366 | 19.5 | 20.33 | 0.9 | KM Plot |
| LIHC | rs138038575 | chr20:37003236 | G/A | 2.11E-15 | 360 | 20.03 | 19.13 | 0.53 | KM Plot |
| LIHC | rs138078318 | chr14:73436673 | TTAAAA/T | 7.13E-5 | 366 | 20.38 | 13.03 | 7.4 | KM Plot |
| LIHC | rs138557601 | chr14:73442915 | TGAAG/T | 3.73E-6 | 368 | 20.5 | 13.03 | 8.73 | KM Plot |
| LIHC | rs138934670 | chr2:37136145 | A/AAAC | 8.63E-6 | 366 | 20.6 | 12.17 | 8.73 | KM Plot |
| LIHC | rs138987774 | chr2:37103063 | G/A | 9.47E-6 | 366 | 20.45 | 12.17 | 8.73 | KM Plot |
| LIHC | rs139124152 | chr15:91751558 | T/TA | 1.84E-5 | 367 | 20.5 | 14.6 | 9.87 | KM Plot |
| LIHC | rs139468013 | chr11:107166958 | A/T | 5.09E-6 | 363 | 19.83 | 20.62 | 1.87 | KM Plot |
| LIHC | rs139618470 | chr2:37188428 | AT/A | 8.17E-6 | 365 | 20.4 | 13.2 | 8.73 | KM Plot |
| LIHC | rs140434853 | chr11:73531784 | A/AATAT | 3.57E-6 | 366 | 19.43 | 21.2 | 1.87 | KM Plot |
| LIHC | rs140973674 | chr2:169078341 | G/GATAATTAACC | 4.2E-6 | 368 | 19.58 | 21.33 | 13.87 | KM Plot |